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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111219198Si:ch211-112c15.8. (411 aa)    
Predicted Functional Partners:
LOC111220854
Tumor necrosis factor a (TNF superfamily, member 2).
    
 0.793
tradd
Tnfrsf1a-associated via death domain.
    
 0.780
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.778
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
    
 0.722
ENSSDUP00000026265
SHANK-associated RH domain interacting protein.
    
 0.694
bag4
BCL2 associated athanogene 4.
    
 0.684
fadd
Uncharacterized protein.
   
 0.672
LOC111237288
Sharpin and rbck1 related.
    
 0.667
rbck1
RanBP-type and C3HC4-type zinc finger containing 1.
    
 0.667
nsmaf
Neutral sphingomyelinase (N-SMase) activation associated factor.
    
 0.639
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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