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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atp13a2Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (1162 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
   
 
 0.743
park7
Parkinson protein 7.
     
 0.643
pink1
PTEN induced kinase 1.
      
 0.628
SNCA
Synuclein alpha; Belongs to the synuclein family.
   
  
 0.622
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.612
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
   
 
 0.607
h6pd
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
   
  
 0.602
atxn2
Ataxin 2.
   
  
 0.601
fbxo7
F-box protein 7.
   
  
 0.598
pla2g6
Phospholipase A2, group VI (cytosolic, calcium-independent).
      
 0.594
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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