Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LOC111230068 | foxn1 | ENSSDUP00000018697 | ENSSDUP00000003779 | CD4-1 molecule. | Forkhead box N1. | 0.428 |
LOC111230068 | rag1 | ENSSDUP00000018697 | ENSSDUP00000023609 | CD4-1 molecule. | V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...] | 0.671 |
ankmy1 | foxn1 | ENSSDUP00000022159 | ENSSDUP00000003779 | Uncharacterized protein. | Forkhead box N1. | 0.434 |
dlx3 | foxn1 | ENSSDUP00000005108 | ENSSDUP00000003779 | Distal-less homeobox 3b. | Forkhead box N1. | 0.562 |
fezf2 | foxn1 | ENSSDUP00000011238 | ENSSDUP00000003779 | FEZ family zinc finger 2. | Forkhead box N1. | 0.472 |
foxn1 | LOC111230068 | ENSSDUP00000003779 | ENSSDUP00000018697 | Forkhead box N1. | CD4-1 molecule. | 0.428 |
foxn1 | ankmy1 | ENSSDUP00000003779 | ENSSDUP00000022159 | Forkhead box N1. | Uncharacterized protein. | 0.434 |
foxn1 | dlx3 | ENSSDUP00000003779 | ENSSDUP00000005108 | Forkhead box N1. | Distal-less homeobox 3b. | 0.562 |
foxn1 | fezf2 | ENSSDUP00000003779 | ENSSDUP00000011238 | Forkhead box N1. | FEZ family zinc finger 2. | 0.472 |
foxn1 | gcm2 | ENSSDUP00000003779 | ENSSDUP00000013827 | Forkhead box N1. | Glial cells missing transcription factor 2. | 0.596 |
foxn1 | hoxa3 | ENSSDUP00000003779 | ENSSDUP00000006459 | Forkhead box N1. | Homeobox A4a. | 0.603 |
foxn1 | hoxc13 | ENSSDUP00000003779 | ENSSDUP00000018881 | Forkhead box N1. | Homeobox C13a. | 0.636 |
foxn1 | ikzf1 | ENSSDUP00000003779 | ENSSDUP00000026774 | Forkhead box N1. | IKAROS family zinc finger 1 (Ikaros). | 0.431 |
foxn1 | ptf1a | ENSSDUP00000003779 | ENSSDUP00000005400 | Forkhead box N1. | Pancreas associated transcription factor 1a. | 0.426 |
foxn1 | rag1 | ENSSDUP00000003779 | ENSSDUP00000023609 | Forkhead box N1. | V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...] | 0.576 |
gcm2 | foxn1 | ENSSDUP00000013827 | ENSSDUP00000003779 | Glial cells missing transcription factor 2. | Forkhead box N1. | 0.596 |
hoxa3 | foxn1 | ENSSDUP00000006459 | ENSSDUP00000003779 | Homeobox A4a. | Forkhead box N1. | 0.603 |
hoxc13 | foxn1 | ENSSDUP00000018881 | ENSSDUP00000003779 | Homeobox C13a. | Forkhead box N1. | 0.636 |
ikzf1 | foxn1 | ENSSDUP00000026774 | ENSSDUP00000003779 | IKAROS family zinc finger 1 (Ikaros). | Forkhead box N1. | 0.431 |
ikzf1 | rag1 | ENSSDUP00000026774 | ENSSDUP00000023609 | IKAROS family zinc finger 1 (Ikaros). | V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...] | 0.564 |
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