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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000003794Uncharacterized protein. (321 aa)    
Predicted Functional Partners:
tbccd1
TBCC domain containing 1.
      
 0.603
icmt
Protein-S-isoprenylcysteine O-methyltransferase.
      
 0.600
gins1
GINS complex subunit 1 (Psf1 homolog).
      
 0.591
Crtam
Ig-like domain-containing protein.
      
 0.591
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
      
 0.590
LOC111235018
Tumor necrosis factor receptor superfamily, member 9a.
      
 0.587
LOC111221697
Rho guanine nucleotide exchange factor (GEF) 25b.
    
 
 0.443
LOC111228233
Glucose-fructose oxidoreductase domain containing 1.
      
 0.426
gfod2
Glucose-fructose oxidoreductase domain containing 2.
      
 0.426
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.