Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111229560Cryptochrome circadian regulator 2. (710 aa)    
Predicted Functional Partners:
per1
Period circadian clock 1b.
   
 0.945
arntl
Aryl hydrocarbon receptor nuclear translocator-like 1a.
   
 0.881
timeless
Timeless circadian clock.
    
 0.867
LOC111234344
Neuronal PAS domain protein 2.
   
 0.855
fbxl15
F-box and leucine-rich repeat protein 15.
   
 0.778
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
   
 0.759
LOC111228424
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
 0.759
LOC111221955
Period circadian clock 3.
   
 0.753
LOC111238968
Period circadian clock 2.
   
 0.753
PER2
Period circadian regulator 2.
   
 0.753
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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