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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csrnp2Cysteine-serine-rich nuclear protein 2. (522 aa)    
Predicted Functional Partners:
LOC111234949
Zinc finger and BTB domain containing 39.
   
  
 0.615
Gpr84
G protein-coupled receptor 84.
      
 0.533
ppp1cc
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.457
LOC111217471
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.457
LOC111219951
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.457
nr6a1
Nuclear receptor subfamily 6, group A, member 1a.
      
 0.418
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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