Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sspoSubcommissural organ spondin. (5064 aa)    
Predicted Functional Partners:
adamts13
ADAM metallopeptidase with thrombospondin type 1 motif, 13.
    
 0.799
nup214
Nup214_FG domain-containing protein.
    
 0.708
gp1bb
Glycoprotein Ib platelet subunit beta.
    
 0.690
nup98
Nucleoporin 98.
    
 0.676
LOC111217323
Glycoprotein IX (platelet).
   
 0.671
f5
Coagulation factor V; Belongs to the multicopper oxidase family.
    
 0.665
LOC111232364
Coagulation factor VIII, procoagulant component; Belongs to the multicopper oxidase family.
    
 0.665
nup43
Nucleoporin 43.
    
 0.656
ENSSDUP00000000077
Nucleoporin 88.
    
 0.638
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.626
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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