close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111231922Uncharacterized protein. (218 aa)    
Predicted Functional Partners:
LOC111225631
RAB11 family interacting protein 5a (class I).
   
 0.970
rab11fip2
RAB11 family interacting protein 2 (class I).
   
 0.970
LOC111229642
Uncharacterized protein.
   
 0.970
LOC111217580
Intersectin 2b.
    
 0.825
itsn2
Intersectin 2a.
    
 0.825
rab3ip
RAB3A interacting protein (rabin3).
    
 0.803
LOC111229619
RAB3A interacting protein (rabin3)-like 1.
    
 0.803
rab11fip4
RAB11 family interacting protein 4 (class II) b.
    
 0.756
rab11fip3
RAB11 family interacting protein 3 (class II).
    
 0.756
LOC111217810
RAB11 family interacting protein 4 (class II) a.
    
 0.756
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.