STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marchf2Membrane-associated ring finger (C3HC4) 2. (248 aa)    
Predicted Functional Partners:
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 
 0.502
LOC111228443
CCR4-NOT transcription complex, subunit 2.
    
 
 0.502
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.491
faf2
Fas associated factor family member 2.
    
 
 0.491
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.468
stx6
Syntaxin 6; Belongs to the syntaxin family.
    
 
 0.462
SPATA5
Spermatogenesis associated 5.
    
 
 0.419
LOC111229268
Zgc:136908; Belongs to the AAA ATPase family.
    
 
 0.419
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.419
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.419
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.