STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111237288Sharpin and rbck1 related. (705 aa)    
Predicted Functional Partners:
LOC111233929
Uncharacterized protein.
   
 0.990
LOC111237348
Si:dkey-181m9.8.
   
 0.990
ENSSDUP00000026265
SHANK-associated RH domain interacting protein.
  
0.974
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 0.968
xiap
X-linked inhibitor of apoptosis.
    
 0.952
LOC111240026
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.947
LOC111217845
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.947
LOC111234415
Baculoviral IAP repeat containing 2.
    
 0.946
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.944
LOC111232930
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.940
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.