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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mib2Mindbomb E3 ubiquitin protein ligase 2. (1027 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
   
 0.991
tradd
Tnfrsf1a-associated via death domain.
    
  0.939
prkn
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 0.915
traf7
TNF receptor-associated factor 7.
    
 0.909
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.904
atm
Non-specific serine/threonine protein kinase.
    
 0.901
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.892
zfand4
Zinc finger, AN1-type domain 4.
   
 0.860
ENSSDUP00000009749
Ubiquitin-like domain-containing protein.
    
 0.843
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.843
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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