Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zfyve27Zinc finger, FYVE domain containing 27. (490 aa)    
Predicted Functional Partners:
stard3
StAR-related lipid transfer (START) domain containing 3.
   
  
 0.798
reep1
Receptor expression-enhancing protein.
    
 
 0.787
spast
Spastin; Belongs to the AAA ATPase family.
    
 
 0.768
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 
 0.761
LOC111233565
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 
 0.761
atl1
Atlastin GTPase 1.
    
 
 0.760
pdzd8
PDZ domain containing 8.
    
 
 0.754
washc5
WASH complex subunit 5.
      
 0.725
ATP5F1A
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.684
LOC111239888
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.684
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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