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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc59Coiled-coil domain containing 59. (260 aa)    
Predicted Functional Partners:
llph
LLP homolog, long-term synaptic facilitation factor.
   
    0.842
mrpl55
Zgc:171480.
      
 0.531
ccdc58
Coiled-coil domain containing 58.
   
    0.503
denr
Density-regulated protein; Belongs to the DENR family.
   
    0.499
rwdd1
RWD domain containing 1.
   
    0.436
brix1
Brix domain containing 2.
   
    0.435
ikbkg
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
  0.427
optn
Optineurin.
    
  0.427
rbm42
RNA binding motif protein 42.
      
 0.420
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
   
    0.405
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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