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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111221236Zinc finger, AN1-type domain 5b. (203 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.735
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
   
 0.732
rps27a
Ribosomal protein S27a.
    
 0.569
rab21
RAB21, member RAS oncogene family.
   
 
 0.469
slc12a8
Solute carrier family 12 member 8.
      
 0.465
ENSSDUP00000009749
Ubiquitin-like domain-containing protein.
    
 0.453
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.453
LOC111228782
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.453
pex6
Peroxisomal biogenesis factor 6.
     
 0.425
LOC111216520
Uncharacterized protein.
    
 0.421
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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