Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC111219944Epithelial splicing regulatory protein 2. (803 aa)    
Predicted Functional Partners:
RBPMS
RNA binding protein, mRNA processing factor.
    
 
 0.837
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
     
 0.559
ENSSDUP00000002880
Heterogeneous nuclear ribonucleoprotein M.
     
 0.547
ENSSDUP00000031251
Uncharacterized protein.
      
 0.543
polr2k
Uncharacterized protein.
     
 0.503
LOC111218510
RAN binding protein 2.
    
   0.491
LOC111230553
RRM domain-containing protein.
    
 0.483
SRSF10
Serine and arginine rich splicing factor 10.
    
 0.483
ENSSDUP00000018129
QKI, KH domain containing, RNA binding b.
    
 0.456
LOC111219821
QKI, KH domain containing, RNA binding 2.
    
 0.456
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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