STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lyrm1LYR motif containing 1; Belongs to the complex I LYR family. (151 aa)    
Predicted Functional Partners:
b9d1
B9 protein domain 1.
    
 0.743
cc2d2a
Coiled-coil and C2 domain containing 2A.
    
 0.733
LOC111232230
Tr-type G domain-containing protein.
    
 0.701
LOC111228797
Eukaryotic translation elongation factor 2b.
    
 0.701
tmem67
Transmembrane protein 67.
   
 
 0.694
tmem216
Transmembrane protein 216.
     
 0.684
ahi1
Abelson helper integration site 1.
    
 0.675
kin
Kin17 DNA and RNA binding protein.
    
 0.665
mks1
MKS transition zone complex subunit 1.
    
 0.662
sdhaf3
Succinate dehydrogenase complex assembly factor 3.
      
 0.604
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.