Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zbtb17Zinc finger and BTB domain containing 17. (862 aa)    
Predicted Functional Partners:
LOC111238287
BHLH domain-containing protein.
    
  0.901
myc
Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.
    
 0.901
LOC111239852
Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.
    
  0.901
huwe1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
    
 0.596
LOC111218078
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.458
mysm1
Myb-like, SWIRM and MPN domains 1.
   
  0.441
LOC111239398
MYCN proto-oncogene, bHLH transcription factor.
    
 0.424
topbp1
DNA topoisomerase II binding protein 1.
    
 
 0.421
iqce
Uncharacterized protein.
    
 
 0.413
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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