STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000004431Uncharacterized protein. (1140 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.876
pcgf1
Polycomb group ring finger 1.
    
 0.816
pcgf6
Polycomb group ring finger 6.
    
 0.816
ENSSDUP00000016441
Uncharacterized protein.
    
 0.601
LOC111230448
Lysine (K)-specific demethylase 2Aa.
   
 0.590
LOC111232726
Lysine (K)-specific demethylase 2Ab.
   
 0.590
LOC111226831
Zgc:158376.
   
 0.590
LOC111234153
Lysine (K)-specific demethylase 2Bb.
   
 0.590
LOC111226470
Lysine (K)-specific demethylase 2Ba.
   
 0.590
LOC111224919
YY1 associated factor 2.
    
 
 0.502
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.