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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111229555Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family. (547 aa)    
Predicted Functional Partners:
wdr43
WD repeat domain 43.
   
 0.579
utp20
UTP20 small subunit processome component.
   
 0.542
utp4
UTP4 small subunit processome component.
    
 0.540
utp15
UTP15 small subunit processome component.
   
 0.526
wdr75
WD repeat domain 75.
   
 0.521
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
  0.497
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.496
utp6
UTP6 small subunit processome component.
   
 0.495
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
  0.492
fbl
Fibrillarin.
    
 0.491
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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