Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
skida1SKI/DACH domain containing 1. (742 aa)    
Predicted Functional Partners:
eed
Embryonic ectoderm development.
    
 
 0.844
suz12
SUZ12 polycomb repressive complex 2 subunit b.
    
 
 0.826
LOC111217592
VEFS-Box domain-containing protein.
    
 
 0.826
cpox
Coproporphyrinogen oxidase.
    
   0.806
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 0.770
ezh2
Enhancer of zeste 2 polycomb repressive complex 2 subunit.
   
 0.767
EZH1
Enhancer of zeste 1 polycomb repressive complex 2 subunit.
   
 0.767
actl6a
Actin-like 6A; Belongs to the actin family.
   
 0.733
LOC111222638
PHD finger protein 1.
    
 
 0.683
mtf2
Metal response element binding transcription factor 2.
    
 
 0.683
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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