plaat1 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

plaat1

Phospholipase A and acyltransferase 1. (178 aa)

Predicted Functional Partners:

gak

0.918

dnajc10

0.793

grpel1

0.787

CLPB

0.783

dnajc6

0.765

bag3

0.716

hspa5

0.678

hsp90b1

0.663

LOC111218551

0.642

hsp90ab1

0.641

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLPB	LOC111218551	ENSSDUP00000000439	ENSSDUP00000024083	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock 10 protein 1; Belongs to the GroES chaperonin family.	0.931
CLPB	dnajc10	ENSSDUP00000000439	ENSSDUP00000017863	ClpB homolog, mitochondrial AAA ATPase chaperonin.	DnaJ (Hsp40) homolog, subfamily C, member 10.	0.768
CLPB	grpel1	ENSSDUP00000000439	ENSSDUP00000023833	ClpB homolog, mitochondrial AAA ATPase chaperonin.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.980
CLPB	hsp90ab1	ENSSDUP00000000439	ENSSDUP00000005172	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.741
CLPB	hsp90b1	ENSSDUP00000000439	ENSSDUP00000030975	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 90, beta (grp94), member 1.	0.728
CLPB	hspa5	ENSSDUP00000000439	ENSSDUP00000032656	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.824
CLPB	plaat1	ENSSDUP00000000439	ENSSDUP00000004508	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Phospholipase A and acyltransferase 1.	0.783
LOC111218551	CLPB	ENSSDUP00000024083	ENSSDUP00000000439	Heat shock 10 protein 1; Belongs to the GroES chaperonin family.	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.931
LOC111218551	dnajc10	ENSSDUP00000024083	ENSSDUP00000017863	Heat shock 10 protein 1; Belongs to the GroES chaperonin family.	DnaJ (Hsp40) homolog, subfamily C, member 10.	0.709
LOC111218551	grpel1	ENSSDUP00000024083	ENSSDUP00000023833	Heat shock 10 protein 1; Belongs to the GroES chaperonin family.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.979
LOC111218551	hsp90ab1	ENSSDUP00000024083	ENSSDUP00000005172	Heat shock 10 protein 1; Belongs to the GroES chaperonin family.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.742
LOC111218551	hsp90b1	ENSSDUP00000024083	ENSSDUP00000030975	Heat shock 10 protein 1; Belongs to the GroES chaperonin family.	Heat shock protein 90, beta (grp94), member 1.	0.785
LOC111218551	hspa5	ENSSDUP00000024083	ENSSDUP00000032656	Heat shock 10 protein 1; Belongs to the GroES chaperonin family.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.744
LOC111218551	plaat1	ENSSDUP00000024083	ENSSDUP00000004508	Heat shock 10 protein 1; Belongs to the GroES chaperonin family.	Phospholipase A and acyltransferase 1.	0.642
bag3	dnajc10	ENSSDUP00000024862	ENSSDUP00000017863	BCL2 associated athanogene 3.	DnaJ (Hsp40) homolog, subfamily C, member 10.	0.416
bag3	dnajc6	ENSSDUP00000024862	ENSSDUP00000017618	BCL2 associated athanogene 3.	DnaJ (Hsp40) homolog, subfamily C, member 6.	0.680
bag3	gak	ENSSDUP00000024862	ENSSDUP00000031183	BCL2 associated athanogene 3.	Cyclin G associated kinase.	0.857
bag3	hsp90ab1	ENSSDUP00000024862	ENSSDUP00000005172	BCL2 associated athanogene 3.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.428
bag3	hsp90b1	ENSSDUP00000024862	ENSSDUP00000030975	BCL2 associated athanogene 3.	Heat shock protein 90, beta (grp94), member 1.	0.650
bag3	hspa5	ENSSDUP00000024862	ENSSDUP00000032656	BCL2 associated athanogene 3.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.933