Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217945Tripartite motif containing 25. (683 aa)    
Predicted Functional Partners:
ENSSDUP00000014251
Tripartite motif containing 25, like.
     
 
0.900
LOC111230688
Uncharacterized protein.
     
 
0.900
irf5
Interferon regulatory factor 5.
    
 0.692
LOC111219805
Interferon regulatory factor 3.
   
 0.640
DTX1
Deltex E3 ubiquitin ligase 1.
      
 0.628
dhx58
DEXH (Asp-Glu-X-His) box polypeptide 58.
   
 0.608
casp6
Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
   
 0.606
mavs
CARD_2 domain-containing protein.
    
 0.605
ifih1
Interferon induced with helicase C domain 1.
   
 0.596
ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.560
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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