STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217945Tripartite motif containing 25. (683 aa)    
Predicted Functional Partners:
ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.600
ENSSDUP00000025073
Interleukin-1 receptor-associated kinase 3.
   
 0.586
irf5
Interferon regulatory factor 5.
    
 0.576
TLR8
Toll like receptor 8; Belongs to the Toll-like receptor family.
   
 
 0.563
tlr3
Toll-like receptor 3; Belongs to the Toll-like receptor family.
    
 
 0.561
LOC111222069
Calreticulin.
      
 0.551
LOC111219805
Interferon regulatory factor 3.
   
 0.459
tap1
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
   
 
 0.452
igsf9b
Immunoglobulin superfamily member 9B.
    
 0.437
LOC111222317
Immunoglobulin superfamily, member 9Bb.
    
 0.437
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.