LOC111226443 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111226443

E3 ubiquitin protein ligase. (1028 aa)

Predicted Functional Partners:

leo1

0.979

LOC111218100

0.888

ube2a

0.888

ube2b

0.888

cdc73

0.841

paf1

0.829

setd2

0.791

ctr9

0.780

rnf40

0.767

wac

0.761

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111218100	LOC111226443	ENSSDUP00000007074	ENSSDUP00000004618	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	E3 ubiquitin protein ligase.	0.888
LOC111218100	cdc73	ENSSDUP00000007074	ENSSDUP00000012551	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.665
LOC111218100	ctr9	ENSSDUP00000007074	ENSSDUP00000032486	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.641
LOC111218100	leo1	ENSSDUP00000007074	ENSSDUP00000004681	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.963
LOC111218100	paf1	ENSSDUP00000007074	ENSSDUP00000016711	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.619
LOC111218100	rnf40	ENSSDUP00000007074	ENSSDUP00000003466	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	E3 ubiquitin protein ligase.	0.888
LOC111218100	ube2a	ENSSDUP00000007074	ENSSDUP00000007548	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2A (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family.	0.900
LOC111218100	wac	ENSSDUP00000007074	ENSSDUP00000004816	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	WW domain containing adaptor with coiled-coil a.	0.440
LOC111226443	LOC111218100	ENSSDUP00000004618	ENSSDUP00000007074	E3 ubiquitin protein ligase.	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	0.888
LOC111226443	cdc73	ENSSDUP00000004618	ENSSDUP00000012551	E3 ubiquitin protein ligase.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.841
LOC111226443	ctr9	ENSSDUP00000004618	ENSSDUP00000032486	E3 ubiquitin protein ligase.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.780
LOC111226443	leo1	ENSSDUP00000004618	ENSSDUP00000004681	E3 ubiquitin protein ligase.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.979
LOC111226443	paf1	ENSSDUP00000004618	ENSSDUP00000016711	E3 ubiquitin protein ligase.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.829
LOC111226443	rnf40	ENSSDUP00000004618	ENSSDUP00000003466	E3 ubiquitin protein ligase.	E3 ubiquitin protein ligase.	0.767
LOC111226443	setd2	ENSSDUP00000004618	ENSSDUP00000009306	E3 ubiquitin protein ligase.	SET domain containing 2, histone lysine methyltransferase.	0.791
LOC111226443	ube2a	ENSSDUP00000004618	ENSSDUP00000007548	E3 ubiquitin protein ligase.	Ubiquitin-conjugating enzyme E2A (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family.	0.888
LOC111226443	ube2b	ENSSDUP00000004618	ENSSDUP00000028913	E3 ubiquitin protein ligase.	Ubiquitin-conjugating enzyme E2B (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family.	0.888
LOC111226443	wac	ENSSDUP00000004618	ENSSDUP00000004816	E3 ubiquitin protein ligase.	WW domain containing adaptor with coiled-coil a.	0.761
cdc73	LOC111218100	ENSSDUP00000012551	ENSSDUP00000007074	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	0.665
cdc73	LOC111226443	ENSSDUP00000012551	ENSSDUP00000004618	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	E3 ubiquitin protein ligase.	0.841