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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
disc1DISC1 scaffold protein. (855 aa)    
Predicted Functional Partners:
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 
 0.690
Dtnbp1
Dystrobrevin binding protein 1b.
      
 0.607
LOC111219775
NudE neurodevelopment protein 1-like 1a.
    
 
 0.605
NDE1
NudE neurodevelopment protein 1.
    
 
 0.602
LOC111217619
NUDE_C domain-containing protein.
    
 
 0.602
tsnax
Translin-associated factor X.
      
 0.595
LOC111227075
NudE neurodevelopment protein 1-like 1b.
    
 
 0.593
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
   0.547
bbs4
Bardet-Biedl syndrome 4.
    
 
 0.536
PAFAH1B1
Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.
    
 
 0.509
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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