ENSSDUP00000004635 protein (Seriola dumerili)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSSDUP00000004635

Uncharacterized protein. (669 aa)

Predicted Functional Partners:

rps27a

0.521

ddx56

0.510

psmb1

0.480

LOC111223609

0.450

tcap

0.443

cunh1orf74

0.416

uba52

0.411

LOC111228782

0.411

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000004635	LOC111223609	ENSSDUP00000004635	ENSSDUP00000006093	Uncharacterized protein.	Uncharacterized protein.	0.450
ENSSDUP00000004635	LOC111228782	ENSSDUP00000004635	ENSSDUP00000018383	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.411
ENSSDUP00000004635	cunh1orf74	ENSSDUP00000004635	ENSSDUP00000022903	Uncharacterized protein.	Zgc:112163.	0.416
ENSSDUP00000004635	ddx56	ENSSDUP00000004635	ENSSDUP00000032836	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 56.	0.510
ENSSDUP00000004635	psmb1	ENSSDUP00000004635	ENSSDUP00000000744	Uncharacterized protein.	Proteasome subunit beta.	0.480
ENSSDUP00000004635	rps27a	ENSSDUP00000004635	ENSSDUP00000004225	Uncharacterized protein.	Ribosomal protein S27a.	0.521
ENSSDUP00000004635	tcap	ENSSDUP00000004635	ENSSDUP00000031725	Uncharacterized protein.	Titin-cap (telethonin).	0.443
ENSSDUP00000004635	uba52	ENSSDUP00000004635	ENSSDUP00000013443	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.411
LOC111223609	ENSSDUP00000004635	ENSSDUP00000006093	ENSSDUP00000004635	Uncharacterized protein.	Uncharacterized protein.	0.450
LOC111228782	ENSSDUP00000004635	ENSSDUP00000018383	ENSSDUP00000004635	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Uncharacterized protein.	0.411
LOC111228782	psmb1	ENSSDUP00000018383	ENSSDUP00000000744	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome subunit beta.	0.864
LOC111228782	rps27a	ENSSDUP00000018383	ENSSDUP00000004225	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.997
LOC111228782	uba52	ENSSDUP00000018383	ENSSDUP00000013443	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.979
cunh1orf74	ENSSDUP00000004635	ENSSDUP00000022903	ENSSDUP00000004635	Zgc:112163.	Uncharacterized protein.	0.416
ddx56	ENSSDUP00000004635	ENSSDUP00000032836	ENSSDUP00000004635	DEAD (Asp-Glu-Ala-Asp) box helicase 56.	Uncharacterized protein.	0.510
psmb1	ENSSDUP00000004635	ENSSDUP00000000744	ENSSDUP00000004635	Proteasome subunit beta.	Uncharacterized protein.	0.480
psmb1	LOC111228782	ENSSDUP00000000744	ENSSDUP00000018383	Proteasome subunit beta.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.864
psmb1	rps27a	ENSSDUP00000000744	ENSSDUP00000004225	Proteasome subunit beta.	Ribosomal protein S27a.	0.906
psmb1	uba52	ENSSDUP00000000744	ENSSDUP00000013443	Proteasome subunit beta.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.864
rps27a	ENSSDUP00000004635	ENSSDUP00000004225	ENSSDUP00000004635	Ribosomal protein S27a.	Uncharacterized protein.	0.521