Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rab28Uncharacterized protein. (221 aa)    
Predicted Functional Partners:
pde6d
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]
   
 
 0.863
spon2
Spondin 2b, extracellular matrix protein.
      
 0.768
cunh8orf37
Uncharacterized protein.
      
 0.724
ENSSDUP00000004648
Uncharacterized protein.
      
 0.676
trim23
Tripartite motif containing 23.
   
 0.673
LOC111229228
Si:dkey-76b14.2.
     
 0.634
ENSSDUP00000014111
DENN/MADD domain containing 1B.
     
 0.634
dennd1a
DENN/MADD domain containing 1A.
     
 0.634
LOC111226416
FERM and PDZ domain containing 1b.
      
 0.632
dlx3
Distal-less homeobox 3b.
      
 0.630
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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