STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ech1Enoyl CoA hydratase 1, peroxisomal. (310 aa)    
Predicted Functional Partners:
LOC111231890
Sterol carrier protein 2b.
   
 0.904
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.904
eci2
Enoyl-CoA delta isomerase 2.
  
0.853
hsdl2
Hydroxysteroid dehydrogenase like 2.
 
 
 0.794
rpp14
Ribonuclease P/MRP 14 subunit.
   
 0.792
CDYL2
Chromodomain Y like 2.
  
0.755
cdyl
Chromodomain protein, Y-like.
  
0.747
pex5l
Peroxisomal biogenesis factor 5-like a.
    
 0.734
ENSSDUP00000008186
Peroxisomal biogenesis factor 5-like b.
    
 0.734
pex5
Peroxisomal biogenesis factor 5.
    
 0.734
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.