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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111231549Recombination signal binding protein for immunoglobulin kappa J region a. (496 aa)    
Predicted Functional Partners:
maml1
Mastermind-like transcriptional coactivator 1.
   
 0.997
LOC111236171
Notch receptor 1a.
    
 0.991
maml2
MamL-1 domain-containing protein.
   
 0.979
snw1
SNW domain containing 1.
    
 0.974
ENSSDUP00000008124
ANK_REP_REGION domain-containing protein.
    
 0.973
maml3
Mastermind-like transcriptional coactivator 3.
   
 0.966
LOC111223215
Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.
    
 0.963
kat2a
Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.
    
 0.963
LOC111219918
E1A binding protein p300 a.
    
 0.962
LOC111229253
CREB binding protein a.
    
 0.962
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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