STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pef1Penta-EF-hand domain containing 1. (265 aa)    
Predicted Functional Partners:
pdcd6ip
BRO1 domain-containing protein.
    
 
 0.780
sec31a
SEC31 homolog A, COPII coat complex component.
    
 
 0.720
LOC111220106
SEC31 homolog B, COPII coat complex component.
    
 
 0.702
LOC111227193
Heme-binding protein soul5.
    
   0.546
LOC111235489
Heme binding protein 2.
    
   0.546
ENSSDUP00000031189
Uncharacterized protein.
   
 0.533
ENSSDUP00000031197
Uncharacterized protein.
   
 0.533
TINAGL1
Tubulointerstitial nephritis antigen like 1; Belongs to the peptidase C1 family.
      
 0.507
LOC111216611
Heme-binding protein soul5, like.
    
   0.504
LOC111236405
Uncharacterized protein.
    
   0.504
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.