STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000004778DDE_Tnp_1_7 domain-containing protein. (661 aa)    
Predicted Functional Partners:
cd3e
Ig_4 domain-containing protein.
   
 0.912
LOC111235530
Uncharacterized protein.
   
 0.854
ENSSDUP00000031178
Ig-like domain-containing protein.
   
 0.685
LOC111225667
Tyrosine-protein kinase.
   
 0.553
syk
Tyrosine-protein kinase.
   
 0.553
ENSSDUP00000032514
Lymphocyte cytosolic protein 2a.
   
 0.538
oxsm
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.522
LOC111238540
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
    
 0.490
LOC111222777
2Fe-2S ferredoxin-type domain-containing protein.
   
 0.483
fdx2
Ferredoxin 2.
   
 0.483
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.