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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmem82Transmembrane protein 82. (307 aa)    
Predicted Functional Partners:
SLC25A34
Solute carrier family 25 member 34; Belongs to the mitochondrial carrier (TC 2.A.29) family.
 
    
 0.645
ntan1
Uncharacterized protein.
      
 0.538
cep41
Centrosomal protein 41.
      
 0.461
fblim1
Filamin binding LIM protein 1.
 
    
 0.457
cep78
Centrosomal protein 78.
      
 0.454
ENSSDUP00000030597
Ciliary rootlet coiled-coil, rootletin family member 2.
      
 0.435
ENSSDUP00000025403
Syntaphilin b.
      
 0.430
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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