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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tut1Terminal uridylyl transferase 1, U6 snRNA-specific. (801 aa)    
Predicted Functional Partners:
wdr24
WD repeat domain 24.
   
    0.748
prpf4
PRP4 pre-mRNA processing factor 4 homolog (yeast).
   
   0.744
dis3l2
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.
    
 
 0.687
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
   
 
 0.627
lin28a
Lin-28 homolog A.
   
 0.606
ints5
Integrator complex subunit 5.
   
 
  0.603
nudt15
Nudix (nucleoside diphosphate linked moiety X)-type motif 15; Belongs to the Nudix hydrolase family.
      
 0.586
rspry1
Ring finger and SPRY domain containing 1.
     
 0.582
tent4b
Terminal nucleotidyltransferase 4B.
      
 0.562
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 
 0.554
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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