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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
armc3Armadillo repeat containing 3. (791 aa)    
Predicted Functional Partners:
efcab1
EF-hand calcium binding domain 1.
   
 
 0.839
cunh9orf116
Si:ch211-248e11.2.
   
 
 0.825
wdr90
WD repeat domain 90.
    
   0.740
iqub
IQ motif and ubiquitin domain containing.
   
 
 0.738
tekt3
Tektin 3.
   
 
 0.722
ttc25
Tetratricopeptide repeat domain 25.
   
 
 0.722
ribc1
RIB43A domain with coiled-coils 1.
   
 
 0.673
LOC111225202
RIB43A domain with coiled-coils 2.
   
 
 0.673
cunh4orf47
Zgc:153146.
   
  
 0.666
tekt2
Tektin 2 (testicular).
   
 
 0.665
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.