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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111223618Inhibitor of growth protein. (289 aa)    
Predicted Functional Partners:
meaf6
MYST/Esa1-associated factor 6.
    
 0.917
trrap
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
   
 0.894
dmap1
DNA methyltransferase 1 associated protein 1.
   
 0.885
yeats4
YEATS domain containing 4.
   
 0.877
actl6a
Actin-like 6A; Belongs to the actin family.
   
 0.861
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
   
 0.729
LOC111228576
Mortality factor 4 like 1.
   
 0.726
LOC111238659
MRG domain-containing protein.
   
 0.726
epc2
Enhancer of polycomb homolog.
   
 0.713
LOC111233925
Enhancer of polycomb homolog.
   
 0.713
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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