close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111216976Rhomboid domain-containing protein. (347 aa)    
Predicted Functional Partners:
SPATA5
Spermatogenesis associated 5.
    
 
 0.573
LOC111229268
Zgc:136908; Belongs to the AAA ATPase family.
    
 
 0.573
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.573
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.573
tmem214
Transmembrane protein 214.
      
 0.465
tmem70
Transmembrane protein 70.
      
 0.437
tmem38a
Transmembrane protein 38A.
      
 0.428
sae1
SUMO1 activating enzyme subunit 1.
      
 0.426
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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