STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111232022Transmembrane 6 superfamily member 2. (381 aa)    
Predicted Functional Partners:
rbm17
RNA binding motif protein 17.
   
 
 0.800
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
    
 0.662
hapln4
Hyaluronan and proteoglycan link protein 4.
 
    
 0.633
LOC111235311
DEAH (Asp-Glu-Ala-His) box polypeptide 32b.
   
 0.618
LOC111220200
DEAH (Asp-Glu-Ala-His) box polypeptide 32a.
   
 0.618
LOC111221255
DEAQ box RNA-dependent ATPase 1.
   
 0.618
DHX15
DEAH-box helicase 15.
   
 0.610
LOC111231623
DEAH (Asp-Glu-Ala-His) box helicase 15.
   
 0.610
LOC111230140
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.595
LOC111217609
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.595
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.