STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000005020Si:dkey-117n7.4. (352 aa)    
Predicted Functional Partners:
ENSSDUP00000005100
Uncharacterized protein.
 
 
    0.902
ENSSDUP00000025287
Collagen IV NC1 domain-containing protein.
 
   
  0.885
ENSSDUP00000007160
C1q domain-containing protein.
  
     0.533
emid1
EMI domain-containing protein.
  
  
  0.531
LOC111231261
Collectin sub-family member 12.
  
 
  0.530
ENSSDUP00000009109
Uncharacterized protein.
  
     0.529
LOC111231849
C1q and TNF related 7.
  
     0.527
LOC111226502
C1q and TNF related 2.
  
     0.524
ENSSDUP00000001781
Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.
  
 
   0.521
scara3
Scavenger receptor class A, member 3.
  
     0.513
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.