close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps4aVacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family. (436 aa)    
Predicted Functional Partners:
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.995
LOC111237881
Charged multivesicular body protein 5b.
   
 0.975
chmp5
Charged multivesicular body protein 5a.
   
 0.975
chmp1a
Charged multivesicular body protein 1A.
   
 0.971
LOC111226609
Uncharacterized protein.
   
 0.971
chmp1b
Chromatin modifying protein 1B.
   
 0.971
ist1
IST1 factor associated with ESCRT-III.
   
 0.944
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
  
  
 
0.937
LOC111226315
Uncharacterized protein; Belongs to the AAA ATPase family.
  
  
 
0.937
chmp6
Charged multivesicular body protein 6.
    
 0.905
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: medium (76%) [HD]