nmb protein (Seriola dumerili) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

nmb

Uncharacterized protein. (135 aa)

Predicted Functional Partners:

nmbr

0.979

grpr

0.959

LOC111218012

0.959

grp

0.948

elp3

0.870

elp5

0.786

elp1

0.782

sgce

0.720

LOC111220267

0.720

elp4

0.626

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111218012	grp	ENSSDUP00000007451	ENSSDUP00000022823	Gastrin-releasing peptide receptor; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.957
LOC111218012	grpr	ENSSDUP00000007451	ENSSDUP00000003281	Gastrin-releasing peptide receptor; Belongs to the G-protein coupled receptor 1 family.	Gastrin-releasing peptide receptor; Belongs to the G-protein coupled receptor 1 family.	0.901
LOC111218012	nmb	ENSSDUP00000007451	ENSSDUP00000005142	Gastrin-releasing peptide receptor; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.959
LOC111218012	nmbr	ENSSDUP00000007451	ENSSDUP00000002701	Gastrin-releasing peptide receptor; Belongs to the G-protein coupled receptor 1 family.	Neuromedin B receptor; Belongs to the G-protein coupled receptor 1 family.	0.942
LOC111220267	nmb	ENSSDUP00000017729	ENSSDUP00000005142	Sarcoglycan, alpha.	Uncharacterized protein.	0.720
elp1	elp3	ENSSDUP00000009163	ENSSDUP00000011018	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.998
elp1	elp4	ENSSDUP00000009163	ENSSDUP00000028769	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator acetyltransferase complex subunit 4.	0.996
elp1	elp5	ENSSDUP00000009163	ENSSDUP00000028031	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator acetyltransferase complex subunit 5.	0.987
elp1	nmb	ENSSDUP00000009163	ENSSDUP00000005142	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Uncharacterized protein.	0.782
elp3	elp1	ENSSDUP00000011018	ENSSDUP00000009163	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.998
elp3	elp4	ENSSDUP00000011018	ENSSDUP00000028769	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator acetyltransferase complex subunit 4.	0.993
elp3	elp5	ENSSDUP00000011018	ENSSDUP00000028031	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator acetyltransferase complex subunit 5.	0.969
elp3	nmb	ENSSDUP00000011018	ENSSDUP00000005142	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.870
elp4	elp1	ENSSDUP00000028769	ENSSDUP00000009163	Elongator acetyltransferase complex subunit 4.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.996
elp4	elp3	ENSSDUP00000028769	ENSSDUP00000011018	Elongator acetyltransferase complex subunit 4.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.993
elp4	elp5	ENSSDUP00000028769	ENSSDUP00000028031	Elongator acetyltransferase complex subunit 4.	Elongator acetyltransferase complex subunit 5.	0.998
elp4	nmb	ENSSDUP00000028769	ENSSDUP00000005142	Elongator acetyltransferase complex subunit 4.	Uncharacterized protein.	0.626
elp5	elp1	ENSSDUP00000028031	ENSSDUP00000009163	Elongator acetyltransferase complex subunit 5.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.987
elp5	elp3	ENSSDUP00000028031	ENSSDUP00000011018	Elongator acetyltransferase complex subunit 5.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.969
elp5	elp4	ENSSDUP00000028031	ENSSDUP00000028769	Elongator acetyltransferase complex subunit 5.	Elongator acetyltransferase complex subunit 4.	0.998