close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfxankRegulatory factor X-associated ankyrin-containing protein. (234 aa)    
Predicted Functional Partners:
LOC111223148
Regulatory factor X, 5.
   
 
 0.958
rfxap
Regulatory factor X-associated protein.
    
 
 0.837
ciita
NACHT domain-containing protein.
   
 
 0.732
LOC111221632
Activating transcription factor 1.
      
 0.597
NLRC5
NLR family CARD domain containing 5.
   
 
 0.583
mef2b
Myocyte enhancer factor 2b.
      
 0.561
nfyc
Nuclear transcription factor Y, gamma.
    
 
 0.545
ENSSDUP00000010315
ANK_REP_REGION domain-containing protein.
  
   
 0.542
CAMKMT
Calmodulin-lysine N-methyltransferase.
    
 
 0.538
ENSSDUP00000013924
ANK_REP_REGION domain-containing protein.
  
 
  0.531
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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