Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
shld2Si:ch211-134m17.9. (770 aa)    
Predicted Functional Partners:
mad2l2
Mitotic arrest deficient 2 like 2.
    
 
 0.950
LOC111236948
Uncharacterized protein.
    
 
 0.885
rif1
Replication timing regulatory factor 1.
    
 
 0.630
ctc1
Uncharacterized protein.
      
 0.613
paxx
PAXX non-homologous end joining factor.
  
   
 0.589
HNRNPH3
Heterogeneous nuclear ribonucleoprotein H3.
    
 
 0.534
hnrnph1
Heterogeneous nuclear ribonucleoprotein H1.
    
 
 0.534
rev3l
REV3 like, DNA directed polymerase zeta catalytic subunit.
      
 0.521
exo1
Exonuclease 1.
      
 0.504
dna2
DNA replication helicase/nuclease 2.
      
 0.494
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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