STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111219863HtrA serine peptidase 1b. (476 aa)    
Predicted Functional Partners:
LOC111231890
Sterol carrier protein 2b.
    
 0.945
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
    
 0.945
birc6
Baculoviral IAP repeat containing 6.
    
 0.733
ENSSDUP00000030530
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.733
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 0.723
psmc3
Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.
   
 0.705
psmc6
Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family.
   
 0.705
psmc4
Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.
   
 0.705
ephx2
Epoxide hydrolase 2, cytoplasmic.
  
 
 0.691
psmd12
Proteasome 26S subunit, non-ATPase 12.
    
 0.674
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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