close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217875Cryptochrome circadian regulator 5. (522 aa)    
Predicted Functional Partners:
timeless
Timeless circadian clock.
    
 0.809
per1
Period circadian clock 1b.
   
 0.747
arntl
Aryl hydrocarbon receptor nuclear translocator-like 1a.
   
 0.664
LOC111221955
Period circadian clock 3.
   
 0.655
LOC111238968
Period circadian clock 2.
   
 0.655
PER2
Period circadian regulator 2.
   
 0.655
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
   
 0.630
LOC111228424
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
 0.630
LOC111234344
Neuronal PAS domain protein 2.
   
 0.601
fbxl15
F-box and leucine-rich repeat protein 15.
    
 0.588
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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