Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217875Cryptochrome circadian regulator 5. (522 aa)    
Predicted Functional Partners:
per1
Period circadian clock 1b.
   
 0.876
timeless
Timeless circadian clock.
    
 0.862
arntl
Aryl hydrocarbon receptor nuclear translocator-like 1a.
   
 0.802
fbxl15
F-box and leucine-rich repeat protein 15.
   
 0.778
LOC111221955
Period circadian clock 3.
   
 0.762
LOC111238968
Period circadian clock 2.
   
 0.762
PER2
Period circadian regulator 2.
   
 0.762
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
   
 0.749
LOC111228424
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
 0.749
LOC111228755
Zgc:66475.
      
 0.715
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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