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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sf1Splicing factor 1. (655 aa)    
Predicted Functional Partners:
sf3a2
Splicing factor 3a, subunit 2.
   
 0.991
sf3a1
Splicing factor 3a, subunit 1.
   
 0.987
sf3a3
Splicing factor 3a, subunit 3.
   
 0.971
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.969
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.969
LOC111230140
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.953
LOC111217609
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.953
sf3b1
Splicing factor 3b, subunit 1.
   
 0.917
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
   
 0.839
rbm25
PWI domain-containing protein.
   
 0.823
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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