ENSSDUP00000005314 protein (Seriola dumerili)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSSDUP00000005314

Uncharacterized protein. (215 aa)

Predicted Functional Partners:

rps6kc1

0.510

ENSSDUP00000021160

0.505

LOC111232430

0.492

LOC111225892

0.492

LOC111229101

0.486

toe1

0.448

optn

0.445

katnal2

0.445

CAAP1

0.444

nsun6

0.431

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAAP1	ENSSDUP00000005314	ENSSDUP00000011120	ENSSDUP00000005314	Caspase activity and apoptosis inhibitor 1.	Uncharacterized protein.	0.444
ENSSDUP00000005314	CAAP1	ENSSDUP00000005314	ENSSDUP00000011120	Uncharacterized protein.	Caspase activity and apoptosis inhibitor 1.	0.444
ENSSDUP00000005314	ENSSDUP00000021160	ENSSDUP00000005314	ENSSDUP00000021160	Uncharacterized protein.	Si:ch211-220f12.4.	0.505
ENSSDUP00000005314	LOC111225892	ENSSDUP00000005314	ENSSDUP00000019139	Uncharacterized protein.	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family.	0.492
ENSSDUP00000005314	LOC111229101	ENSSDUP00000005314	ENSSDUP00000025885	Uncharacterized protein.	Otolin 1a.	0.486
ENSSDUP00000005314	LOC111232430	ENSSDUP00000005314	ENSSDUP00000002852	Uncharacterized protein.	Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family.	0.492
ENSSDUP00000005314	katnal2	ENSSDUP00000005314	ENSSDUP00000026441	Uncharacterized protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.445
ENSSDUP00000005314	nsun6	ENSSDUP00000005314	ENSSDUP00000010334	Uncharacterized protein.	NOP2/Sun RNA methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.431
ENSSDUP00000005314	optn	ENSSDUP00000005314	ENSSDUP00000020289	Uncharacterized protein.	Optineurin.	0.445
ENSSDUP00000005314	rps6kc1	ENSSDUP00000005314	ENSSDUP00000022321	Uncharacterized protein.	Ribosomal protein S6 kinase polypeptide 1.	0.510
ENSSDUP00000005314	toe1	ENSSDUP00000005314	ENSSDUP00000018206	Uncharacterized protein.	Target of EGR1, exonuclease.	0.448
ENSSDUP00000021160	ENSSDUP00000005314	ENSSDUP00000021160	ENSSDUP00000005314	Si:ch211-220f12.4.	Uncharacterized protein.	0.505
ENSSDUP00000021160	LOC111229101	ENSSDUP00000021160	ENSSDUP00000025885	Si:ch211-220f12.4.	Otolin 1a.	0.744
ENSSDUP00000021160	katnal2	ENSSDUP00000021160	ENSSDUP00000026441	Si:ch211-220f12.4.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.682
ENSSDUP00000021160	optn	ENSSDUP00000021160	ENSSDUP00000020289	Si:ch211-220f12.4.	Optineurin.	0.671
ENSSDUP00000021160	rps6kc1	ENSSDUP00000021160	ENSSDUP00000022321	Si:ch211-220f12.4.	Ribosomal protein S6 kinase polypeptide 1.	0.764
LOC111225892	ENSSDUP00000005314	ENSSDUP00000019139	ENSSDUP00000005314	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.492
LOC111225892	LOC111232430	ENSSDUP00000019139	ENSSDUP00000002852	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family.	0.544
LOC111229101	ENSSDUP00000005314	ENSSDUP00000025885	ENSSDUP00000005314	Otolin 1a.	Uncharacterized protein.	0.486
LOC111229101	ENSSDUP00000021160	ENSSDUP00000025885	ENSSDUP00000021160	Otolin 1a.	Si:ch211-220f12.4.	0.744