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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111233887Uncharacterized protein. (581 aa)    
Predicted Functional Partners:
etfa
Electron transfer flavoprotein subunit alpha.
    
 0.735
cwc25
CWC25 spliceosome associated protein homolog.
   
    0.696
rubcnl
Rubicon like autophagy enhancer.
   
    0.696
C1orf109
C19h1orf109 homolog (H. sapiens).
   
    0.696
etfb
Electron transfer flavoprotein subunit beta.
    
  0.667
LOC111237209
Thioesterase superfamily member 4.
     
 0.617
hadh
Hydroxyacyl-CoA dehydrogenase.
  
 
 0.605
cryl1
Crystallin, lambda 1.
  
 
 0.605
ftsj1
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
   
    0.602
calhm2
Calcium homeostasis modulator family member 2, tandem duplicate 2.
   
    0.597
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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