Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
atg10ATG10 autophagy related 10 homolog (S. cerevisiae). (244 aa)    
Predicted Functional Partners:
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.999
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 0.996
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
    
 0.995
atg16l1
ATG16 autophagy related 16-like 1 (S. cerevisiae).
    
 0.950
atg3
Autophagy-related protein 3.
    
 
 0.934
LOC111216925
WD_REPEATS_REGION domain-containing protein.
    
 0.901
becn1
Beclin 1, autophagy related.
      
 0.780
atg4b
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.
    
 
 0.778
gabarap
GABA(A) receptor-associated protein b.
    
 0.769
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
      
 0.769
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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