STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111233279Family with sequence similarity 110 member B. (478 aa)    
Predicted Functional Partners:
msantd4
Myb/SANT-like DNA-binding domain containing 4 with coiled-coils.
      
 0.584
aasdhppt
Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.
      
 0.580
ankrd49
Ankyrin repeat domain 49.
      
 0.578
nsmaf
Neutral sphingomyelinase (N-SMase) activation associated factor.
      
 0.560
ENSSDUP00000019240
Centrosome and spindle pole associated protein 1a.
      
 0.472
cspp1
Uncharacterized protein.
      
 0.472
tmem106b
Transmembrane protein 106Ba.
      
 0.471
slc2a12
Solute carrier family 2 member 12; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
      
 0.451
ankrd34c
ANK_REP_REGION domain-containing protein.
      
 0.434
ANKRD34A
Ankyrin repeat domain 34A.
      
 0.434
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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