Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111239343Uncharacterized protein. (1311 aa)    
Predicted Functional Partners:
LOC111232433
Slit homolog 3 (Drosophila).
   
 0.711
LOC111235880
Slit homolog 1b (Drosophila).
   
 0.711
slit1
Slit homolog 1a (Drosophila).
   
 0.711
slit2
Slit homolog 2 (Drosophila).
   
 0.711
Nyx
Nyctalopin.
   
 0.706
ENSSDUP00000011826
LRRNT domain-containing protein.
   
 0.638
abl2
Tyrosine-protein kinase.
   
 0.606
abl1
Tyrosine-protein kinase.
   
 0.606
nrp1
Neuropilin; Belongs to the neuropilin family.
     
 0.567
neo1
Neogenin 1b.
    
 0.536
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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