Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111220085Si:dkey-202c14.3. (637 aa)    
Predicted Functional Partners:
fam20b
FAM20B glycosaminoglycan xylosylkinase.
   
 0.564
ENSSDUP00000000386
Uncharacterized protein.
  
   
 0.466
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
   
 0.439
enkd1
Enkurin domain containing 1.
      
 0.418
ttc21b
Tetratricopeptide repeat domain 21B.
      
 0.416
LOC111217596
Fleer.
      
 0.405
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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